<?xml version="1.0" encoding="utf-8" ?>
<article xml:lang="en" article-type="research-article" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">
    <front>
        <journal-meta>
            <journal-id journal-id-type="publisher-id">PSJFS</journal-id>
            <journal-title-group>
                <journal-title>Potravinarstvo Slovak Journal of Food Sciences</journal-title>
                <abbrev-journal-title abbrev-type="pubmed">Potr. S. J. F. Sci.</abbrev-journal-title>
            </journal-title-group>
            <issn pub-type="ppub">1338-0230</issn>
            <issn pub-type="epub">1337-0960</issn>
            <publisher>
                <publisher-name>Association HACCP Consulting</publisher-name>
            </publisher>
        </journal-meta>
        <article-meta>
            <article-id pub-id-type="publisher-id">PSJFS-13-1-174</article-id>
            <article-id pub-id-type="doi">10.5219/1047</article-id>
            <article-categories>
                <subj-group subj-group-type="heading">
                    <subject>ARTICLE</subject>
                </subj-group>
            </article-categories>
            <title-group>
                <article-title>MICROBIOTA OF DIFFERENT WINE GRAPE BERRIES</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author">
                    <name>
                        <surname>Ka&#x010D;&#x00E1;niov&#x00E1;</surname>
                        <given-names>Miroslava</given-names>
                    </name>
                    <xref ref-type="corresp" rid="cor1">&#x002A;</xref>
                </contrib>
                <contrib contrib-type="author">
                    <name>
                        <surname>Kunov&#x00E1;</surname>
                        <given-names>Simona</given-names>
                    </name>
                    <xref ref-type="aff" rid="aff2" />
                </contrib>
                <contrib contrib-type="author">
                    <name>
                        <surname>Felsöciov&#x00E1;</surname>
                        <given-names>So&#x0148;a</given-names>
                    </name>
                    <xref ref-type="aff" rid="aff3" />
                </contrib>
                <contrib contrib-type="author">
                    <name>
                        <surname>Ivani&#x0161;ov&#x00E1;</surname>
                        <given-names>Eva</given-names>
                    </name>
                    <xref ref-type="aff" rid="aff4" />
                </contrib>
                <contrib contrib-type="author">
                    <name>
                        <surname>K&#x00E1;ntor</surname>
                        <given-names>Attila</given-names>
                    </name>
                    <xref ref-type="aff" rid="aff5" />
                </contrib>
                <contrib contrib-type="author">
                    <name>
                        <surname>&#x17D;iarovsk&#xE1;</surname>
                        <given-names>Jana</given-names>
                    </name>
                </contrib>
                <contrib contrib-type="author">
                    <name>
                        <surname>Puchalski</surname>
                        <given-names>Czeslaw</given-names>
                    </name>
                    <xref ref-type="aff" rid="aff6" />
                </contrib>
                <contrib contrib-type="author">
                    <name>
                        <surname>Terentjeva</surname>
                        <given-names>Margarita</given-names>
                    </name>
                    <xref ref-type="aff" rid="aff7" />
                </contrib>
                <aff id="aff2">
                    <institution>Simona Kunov&#x00E1;, Slovak University of Agriculture, Faculty of Biotechnology and Food Sciences, Department of Food Hygiene and Safety, Tr. A. Hlinku 2, 949 76 Nitra, Slovakia, Tel.: +421376415907, E-mail: simona.kunova@uniag.sk</institution>
                </aff>
                <aff id="aff3">
                    <institution>So&#x0148;a Felsöciov&#x00E1;, Slovak University of Agriculture, Faculty of Biotechnology and Food Sciences, Department of Microbiology, Tr. A. Hlinku 2, 949 76 Nitra, Slovakia, Tel.: +421376415813, E-mail: sona.felsociova@uniag.sk</institution>
                </aff>
                <aff id="aff4">
                    <institution>Eva Ivani&#x0161;ov&#x00E1;, Slovak University of Agriculture, Faculty of Biotechnology and Food Sciences, Department of Plant products storage and processing, Tr. A. Hlinku 2, 949 76 Nitra Slovakia, Tel.: +421376414421, E-mail: eva.ivanisova@uniag.sk</institution>
                </aff>
                <aff id="aff5">
                    <institution>Attila K&#x00E1;ntor, Slovak University of Agriculture, Faculty of Biotechnology and Food Sciences, Department of Plant products storage and processing, Tr. A. Hlinku 2, 949 76 Nitra, Slovakia, Tel.: +421376415815, E-mail: attila.kantor@uniag.sk</institution>
                </aff>
                <aff id="aff6">
                    <institution>Czeslaw Puchalski, Faculty of Biology and Agriculture, University of Rzeszow, Department of Bioenergy Technology and Food Analysis, Zelwerowicza St. 4, 35-601 Rzeszow, Poland, Tel.: +48178721000, E-mail: cpuchal@univ.rzeszow.pl</institution>
                </aff>
                <aff id="aff7">
                    <institution>Margarita Terentjeva, Latvia University of Life Sciences and Technologies, Faculty of Veterinary Medicine, Institute of Food and Environmental Hygiene, K. Helmaņa iela 8, LV-3004, Jelgava, Latvia, Tel.: +37163024663, E-mail: margarita.terentjeva@llu.lv</institution>
                </aff>
            </contrib-group>
            <author-notes>
                <corresp id="cor1">
                    <label>&#x002A;</label>Corresponding author: Miroslava Ka&#x010D;&#x00E1;niov&#x00E1;, Slovak University of Agriculture, Faculty of Biotechnology and Food Sciences, Department of Microbiology, Tr. A. Hlinku 2, 949 76, Nitra, Slovakia, Faculty of Biology and Agriculture, University of Rzeszow, Department of Bioenergy Technology and Food Analysis, Zelwerowicza St. 4, 35-601 Rzeszow, Poland, Tel.: <phone>+421376414494</phone>, E-mail: <email xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="miroslava.kacaniova@gmail.sk">miroslava.kacaniova@gmail.sk</email></corresp>
            </author-notes>
            <pub-date pub-type="ppub">
                <month>1</month>
                <year>2019</year>
            </pub-date>
            <volume>13</volume>
            <issue>1</issue>
            <fpage>174</fpage>
            <lpage>181</lpage>
            <history>
                <date date-type="received">
                    <day>9</day>
                    <month>2</month>
                    <year>2019</year>
                </date>
                <date date-type="accepted">
                    <day>28</day>
                    <month>3</month>
                    <year>2019</year>
                </date>
            </history>
            <permissions>
                <copyright-statement>&#x00A9; Association HACCP Consulting. All rights reserved.</copyright-statement>
                <copyright-year>2019</copyright-year>
                <license license-type="open-access" xlink:href="http://creativecommons.org/licenses/by-nc/3.0/">
                    <license-p>This is an Open-Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (<uri xlink:href="http://creativecommons.org/licenses/by-nc/3.0/">http://creativecommons.org/licenses/by-nc/3.0</uri>) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <abstract>
                <p>The wine grape berries share a complex microbial ecology including filamentous fungi, yeasts and bacteria. The microbiota reveals different physiological characteristics and depends on the grape ripening stage and the availability of nutrients with different effect on wine production. The microbiota of grape berries (n = 12) was isolated and identified in the present study. The samples were collected in September 2018. Grape berries were obtained from Vrbovo vineyard located in Slovakia. The grape berries investigated belonged to Blue Frankish, Cabernet Sauvignon, Chardonnay, Dornfelder, Feteasca regala, Green Veltliner, Irsai Oliver, Mūller Thurgau, P&#x00E1;lava, Pinot Blanc, Rhinriesling and Welschriesling varieties. The microorganisms were cultivated on Malt extract agar (MEA) at 25 &#x00B0;C for five days in aerobically for microscopic filamentous fungi and Tryptone Soya agar (TSA) at 37 &#x00B0;C for 24 – 48 h aerobically for bacteria and yeasts. Total bacterial counts on different wine grape berries ranged from 2.57 &#x00B1;0.09 in Chardonnay to 4.39 &#x00B1;0.21 log CFU&#x0387;g<sup>-1</sup> in P&#x00E1;lava. Microscopic filamentous fungi count ranged from 1.18 &#x00B1;0.03 in Blue Frankish to 2.60 &#x00B1;0.17 log CFU&#x0387;g<sup>-1</sup> in Welschriesling. MALDI-TOF MS Biotyper mass spectrometry was used for identification of microorganisms (bacteria and yeasts) and microscopic filamentous fungi with manuals. The most identified microscopic fungal species was <italic>Alternaria</italic> sp., for yeasts <italic>Issatchenkia orientalis</italic> and <italic>Leuconostoc mesenteroides</italic> subsp. <italic>mesenteroides</italic> for bacteria.</p>
            </abstract>
            <kwd-group>
                <kwd>microbiota</kwd>
                <kwd>grape berries</kwd>
                <kwd>identification</kwd>
                <kwd>MALDI-TOF MS Biotyper</kwd>
            </kwd-group>
        </article-meta>
    </front>
    <body>
        <sec sec-type="intro">
            <title>INTRODUCTION</title>
            <p>The <italic>V. vinifera</italic> phyllosphere is colonized by bacteria and fungi which modulate health, development and quality of grape and the produced wine characteristics (<xref ref-type="bibr" rid="b1">Barata, Malfeito-Ferreira andLoureiro, 2012</xref>). The grape surface inhabiting microorganisms are sensitive to environmental changes during wine fermentation and cannot survive in low pH, ethanolic and anaerobic conditions. At the same their metabolic activity on the grape surface can have consequences for wine quality, e.g. metabolic changes produced by phytopathogenic fungi (<xref ref-type="bibr" rid="b14">Hong et al., 2011</xref>).</p>
            <p>The grape microbiota more often demonstrates the beneficial effect, and the participation of microbiota in wine fermentations can improve the sensory characteristics of wines (<xref ref-type="bibr" rid="b4">Ciani et al., 2010</xref>). Studies of microbiota involved in wine fermentations allowed a discovery of microbial species, which show positive enological properties. The application of those microorganisms with <italic>Saccharomyces</italic> yeasts was commercialized in winemaking (<xref ref-type="bibr" rid="b4">Ciani et al., 2010</xref>). With improvement of detection and identification methods in winemaking, a growing number of microorganisms were recognized as active contributors in wine fermentations with significant improvement of sensory qualities of wine (<xref ref-type="bibr" rid="b4">Ciani et al., 2010</xref>).</p>
            <p>Regional wines characteristics potentially are influenced by microbial biogeography, which is another important factor for winemaking. Traditional winemaking relies mostly on native grape microbiota for fermentations. This practice thought to enhance the regional typicity. The role of microorganisms is well described for grape health, fruit and wine quality (<xref ref-type="bibr" rid="b1">Barata, Malfeito-Ferreira and Loureiro, 2012</xref>), but the effect of grape microbiota on regional characteristics of wines is still of limited knowledge. The effect of geographic region, grape variety, and climatic factors influence the bacterial and fungal communities of wine grapes was shown through the growing years (<xref ref-type="bibr" rid="b3">Bokulich et al., 2014</xref>). The regional fungal biodiversity of grapes was demonstrated also globally (<xref ref-type="bibr" rid="b27">Taylor et al., 2014</xref>; <xref ref-type="bibr" rid="b12">Gayevskiy and Goddard, 2012</xref>; <xref ref-type="bibr" rid="b21">Pinto et al., 2015</xref>). The local <italic>Saccharomyces cerevisiae</italic> strains, the principal yeast species for wine fermentations purposes, resulting in distinct wine chemical compositions, thus the role of regional microbiota is important for winemaking (<xref ref-type="bibr" rid="b19">Knight et al., 2015</xref>).</p>
            <p>Study of microbiota of grape berries was conducted in Slovakia (<xref ref-type="bibr" rid="b15">Ka&#x10D;&#xE1;niov&#xE1; et al., 2018</xref>). A total of 33 species of 8 Gram-negative (G<sup>-</sup>, 20.72%) and 10 Gram-positive (G<sup>+</sup>, 31.53%) bacteria and 10 yeasts species of 8 genera (47.74%) were identified with MALDI-TOF Mass Spectrometry. These results show that the yeasts were the most common group pf microorganisms isolated from grapes, but the yeasts and bacteria were isolated from each grape variety. Bacteria counts were higher than yeast. The highest counts of yeast species were identified in Irsai Oliver (10.06%), P&#xE1;lava, Pinot Blanc and Rheinriesling (9.43%) grape varieties (<xref ref-type="bibr" rid="b15">Ka&#x10D;&#xE1;niov&#xE1; et al., 2018</xref>).</p>
            <sec>
                <title>Scientific hypothesis</title>
                <p>Grape berries contain bacteria, yeasts and moulds, which could be identified with MALDI-TOF mass spectrometry. Microbial ecology of grapes could affect the wine grape berries health. Accurate identification of wine grape berries microbiota is essential to understand the grape microbial ecology.</p>
            </sec>
        </sec>
        <sec sec-type="materials|methods">
            <title>MATERIAL AND METHODOLOGY</title>
            <sec>
                <title>Wine grape berry samples</title>
                <p>Twelve grape samples from wineyard in Vrbov&#xE9; located in the Small Carpathian wine region were used in this experiment. Ripe grape bunches were collected into sterile polyethylene bags and transported to the laboratory for microbiological analyses. The grape samples of following varieties were investigated: Blue Frankish, Cabernet Sauvignon, Chardonnay, Dornfelder, Feteasca regala, Green Veltliner, Irsai Oliver, M&#x16B;ller Thurgau, P&#xE1;lava, Pinot Blanc, Rhinriesling and Welschriesling.</p>
            </sec>
            <sec>
                <title>Microbiological analyses of grape berries samples</title>
                <p>Five grams of grape berries from each variety were diluted with 45 mL of sterile physiological saline (0.85%). Berries were stirred on a horizontal shaker for 30 min. After that, the dilutions of 10<sup>-2</sup> and 10<sup>-3</sup> were prepared for cultivation of sampled with spread plate method. A 0.1 mL of each dilution (10<sup>-2</sup>, 10<sup>-3</sup>) was cultivated on Plate count agar (PCA) (Oxoid, UK) and on Malt extract agar base (MEA) (Oxoid, UK) supplemented with bromocresol green (0.020 g.L<sup>-1</sup>) (Centralchem&#xAE;, Slovakia). Inoculated PCA agars were cultivated at 37 &#xB0;C for 24 – 48 h aerobically. Microscopic filamentous fungi were cultivated at 25 &#xB0;C for five days aerobically. The identification of fungal species was done according to the manuals of <xref ref-type="bibr" rid="b25">Samson et al. (2002)</xref>, <xref ref-type="bibr" rid="b24">Samson and Frisvad (2004)</xref>, <xref ref-type="bibr" rid="b22">Pitt and Hocking (2009)</xref>.</p>
                <p>Growing colonies with macroscopic morphological differences were recultivated on TSA (Tryptic Soya agar, Oxoid&#xAE;) and inoculated plates were cultivated at 30 &#xB0;C or 25 &#xB0;C for 24 h for bacteria and yeasts, respectively. After cultivation, the proteins were extraction was done.</p>
            </sec>
            <sec>
                <title>Sample preparation and MALDI-TOF MS measurement</title>
                <p>One colony of each bacterial and yeast isolate was transferred into an Eppendorf vial and mixed with 300 &#x3BC;L of sterile water. After addition of ethanol (900 &#x3BC;L), the suspension was mixed and centrifuged (13 000 g, 2 min). After removal of supernatant, the pellets were dried at room temperature at least for 5 min. The bacterial and yeast pellets were resuspended in 20 – 50 &#x3BC;l of formic acid (70%) and the same amount of acetonitrile. After centrifugation (2 min at 13 000 g), a 1 &#x3BC;L of supernatant was spotted onto a sample position of a polished steel MALDI target plate and dried at room temperature. A 1 &#x3BC;L of MALDI matrix (solution of &#x3B1;-cyano-4-hydroxycinnamic acid (HCCA) in 50% acetonitrile / 2.5% trifluoro-acetic acid) was added to the spot and dried.</p>
                <p>The MALDI target plate was introduced into the MALDI-TOF mass spectrometer for automated measurement and data interpretation. MALDI-TOF profile mass spectra were imported into the MALDI Biotyper 3.0 software and processed automatically after measurement. The logarithm of the score (log[score]) was displayed as the matching result. The MALDI Biotyper output was a log(score) between 0 and 3.0, which was calculated from a comparison of the peak list from an unknown isolate with the reference MSP in the database. A log(score) &#x2265;1.7 indicated identification at the genus level, log(score) &#x2265;2.0 was set as the threshold for a match at the species level. Isolates with &#x2265;2.0 were accepted as a correct identification (<xref ref-type="bibr" rid="b15">Ka&#x10D;&#xE1;niov&#xE1; et al., 2018</xref>).</p>
            </sec>
            <sec>
                <title>Climatic conditions during the wine grape harvest</title>
                <p>Climatic conditions during the harvest were characterized by air temperature (Figure <xref ref-type="fig" rid="F1">1</xref>), soil temperature (Figure <xref ref-type="fig" rid="F2">2</xref>), and cumulative rainfall (Figure <xref ref-type="fig" rid="F3">3</xref>).</p>
                <fig id="F1" position="float">
                    <label>Figure 1</label>
                    <caption>
                        <p>Average daily air temperature in Vrbov&#xE9; in 2018 (<uri>www.shmu.sk</uri>).</p>
                    </caption>
                    <graphic xlink:href="PSJFS-13-1-174_F1.jpg"/>
                </fig>
                <fig id="F2" position="float">
                    <label>Figure 2</label>
                    <caption>
                        <p>Average daily soil temperature in Vrbov&#xE9; in 2018 (<italic>www.shmu.sk</italic>).</p>
                    </caption>
                    <graphic xlink:href="PSJFS-13-1-174_F2.jpg"/>
                </fig>
                <fig id="F3" position="float">
                    <label>Figure 3</label>
                    <caption>
                        <p>The cumulative rainfall in Vrbov&#xE9; in 2018 (<uri>www.shmu.sk</uri>).</p>
                    </caption>
                    <graphic xlink:href="PSJFS-13-1-174_F3.jpg"/>
                </fig>
            </sec>
            <sec>
                <title>Statistic analysis</title>
                <p>All experiments were carried out in triplicate and standard deviations for replication were calculated. The experimental data were subjected to analysis of variance (Duncan&#x27;s test) at a 95% confidence level (software XL STAT, 2019).</p>
            </sec>
        </sec>
        <sec sec-type="results|discussion">
            <title>RESULTS AND DISCUSSION</title>
            <p>In our study, the total bacteria counts isolated from different wine grape berries ranged from 2.57 &#xB1;0.09 in Chardonnay to 4.39 &#xB1;0.21 log cfu.g<sup>-1</sup> in P&#xE1;lava (Table <xref ref-type="table" rid="T1">1</xref>). Microscopic filamentous fungi count ranged from 1.18 &#xB1;0.03 in Blue Frankish to 2.60 &#xB1;0.17 log cfu.g<sup>-1</sup> in Welschriesling. <xref ref-type="bibr" rid="b17">K&#xE1;ntor et al. (2015)</xref> found the bacteria counts on Acetobacter agar (AA) from 1.76 to 2.80 log cfu.mL<sup>-1</sup>. The highest counts of acetic acid bacteria on AA agar was found in grape variety Blaufr&#xE4;nkisch (2.80 log cfu.mL<sup>-1</sup>). Lactic acid bacteria (LAB) counts on MRS agar ranged from 0.48 to 2.06 log cfu.mL<sup>-1</sup>, but the LAB was not isolated from white grape varieties.</p>
            <table-wrap id="T1" position="float">
                <label>Table 1</label>
                <caption>
                    <p>Microorganisms counts isolated from wine grape berry varieties in log cfu.g<sup>-1</sup>.</p>
                </caption>
                <table frame="hsides" rules="none" width="100%">
                    <thead>
                        <tr>
                            <th>Grape type</th>
                            <th>TSA</th>
                            <th>MEA</th>
                        </tr>
                        <tr>
                            <th colspan="3">
                                <hr/>
                            </th>
                        </tr>
                    </thead>
                    <tbody>
                        <tr align="center">
                            <td align="left">Blue Frankish</td>
                            <td>4.42 &#x00B1;0.16<xref ref-type="table-fn" rid="T1FN1">a</xref></td>
                            <td>1.18 &#x00B1;0.03<xref ref-type="table-fn" rid="T1FN1">c</xref></td>
                        </tr>
                        <tr align="center">
                            <td align="left">Cabernet Savignon</td>
                            <td>4.42 &#x00B1;0.09<xref ref-type="table-fn" rid="T1FN1">a</xref></td>
                            <td>2.51 &#x00B1;0.09<xref ref-type="table-fn" rid="T1FN1">ab</xref></td>
                        </tr>
                        <tr align="center">
                            <td align="left">Chardonnay</td>
                            <td>2.57 &#x00B1;0.09<xref ref-type="table-fn" rid="T1FN1">d</xref></td>
                            <td>2.35 &#x00B1;0.16<xref ref-type="table-fn" rid="T1FN1">b</xref></td>
                        </tr>
                        <tr align="center">
                            <td align="left">Dornfelder</td>
                            <td>3.77 &#x00B1;0.12<xref ref-type="table-fn" rid="T1FN1">b</xref></td>
                            <td>1.25 &#x00B1;0.06<xref ref-type="table-fn" rid="T1FN1">c</xref></td>
                        </tr>
                        <tr align="center">
                            <td align="left">Feteasca regala</td>
                            <td>3.75 &#x00B1;0.07<xref ref-type="table-fn" rid="T1FN1">b</xref></td>
                            <td>2.44 &#x00B1;0.11<xref ref-type="table-fn" rid="T1FN1">ab</xref></td>
                        </tr>
                        <tr align="center">
                            <td align="left">Green Veltliner</td>
                            <td>3.43 &#x00B1;0.20<xref ref-type="table-fn" rid="T1FN1">c</xref></td>
                            <td>2.35 &#x00B1;0.17<xref ref-type="table-fn" rid="T1FN1">b</xref></td>
                        </tr>
                        <tr align="center">
                            <td align="left">Irsai Oliver</td>
                            <td>3.85 &#x00B1;0.09<xref ref-type="table-fn" rid="T1FN1">b</xref></td>
                            <td>2.37 &#x00B1;0.14<xref ref-type="table-fn" rid="T1FN1">ab</xref></td>
                        </tr>
                        <tr align="center">
                            <td align="left">M&#x16B;ller Thurgau</td>
                            <td>3.55 &#x00B1;0.07<xref ref-type="table-fn" rid="T1FN1">bc</xref></td>
                            <td>2.49 &#x00B1;0.06<xref ref-type="table-fn" rid="T1FN1">ab</xref></td>
                        </tr>
                        <tr align="center">
                            <td align="left">P&#xE1;lava</td>
                            <td>4.39 &#x00B1;0.21<xref ref-type="table-fn" rid="T1FN1">a</xref></td>
                            <td>1.18 &#x00B1;0.04<xref ref-type="table-fn" rid="T1FN1">c</xref></td>
                        </tr>
                        <tr align="center">
                            <td align="left">Pinot Blanc</td>
                            <td>3.64 &#x00B1;0.13<xref ref-type="table-fn" rid="T1FN1">bc</xref></td>
                            <td>2.44 &#x00B1;0.15<xref ref-type="table-fn" rid="T1FN1">ab</xref></td>
                        </tr>
                        <tr align="center">
                            <td align="left">Rhinriesling</td>
                            <td>3.78 &#x00B1;0.19<xref ref-type="table-fn" rid="T1FN1">b</xref></td>
                            <td>2.43 &#x00B1;0.08<xref ref-type="table-fn" rid="T1FN1">ab</xref></td>
                        </tr>
                        <tr align="center">
                            <td align="left">Welschriesling</td>
                            <td>3.41 &#x00B1;0.16<xref ref-type="table-fn" rid="T1FN1">c</xref></td>
                            <td>2.60 &#x00B1;0.17<xref ref-type="table-fn" rid="T1FN1">a</xref></td>
                        </tr>
                    </tbody>
                </table>
                <table-wrap-foot>
                    <fn id="T1FN1">
                        <p>Note: TSA-Tryptic Soya agar , MEA-Malt extract agar; mean &#x00B1; standard deviation; different letters in column mean that values were significantly different</p>
                    </fn>
                </table-wrap-foot>
            </table-wrap>
            <p>The highest LAB counts were found in grape variety Cabernet sauvignon of 2.06 log cfu.mL<sup>-1</sup>, and the highest counts of LAB were detected in Blaufr&#xE4;nkisch grape variety. The yeasts count on Sabouraud dextrose agar (SDA) ranged from 2.47 log cfu.mL<sup>-1</sup> to 2.76 log cfu.mL<sup>-1</sup>, and the highest counts were on Blaufr&#xE4;nkisch grape variety surface. In generally, limited yeast diversity and low bacteria counts (10 – 10<sup>3</sup> CFU.mL<sup>-1</sup>) were detected on immature grape berries, but the yeasts count increased to 10<sup>4</sup> – 10<sup>6</sup> CFU.mL<sup>-1</sup> as the grapes were ripe enough to harvest. During ripening, the sugars diffuse from the inner tissues of the grape to the surface, that facilitating yeast growth. Unripe grapes mostly harbour <italic>Rhodotorula</italic>, <italic>Cryptococcus</italic> and <italic>Candida</italic> species. These species could be isolated from mature, ripe grapes, however, the apiculate yeasts as <italic>Hanseniaspora</italic> (anamorph <italic>Kloeckera</italic>) and <italic>Metschnikowia</italic>, were mostly distributed. <italic>Hanseniaspora</italic> (<italic>Kloeckera</italic>), <italic>Candida</italic> and <italic>Metschnikowia</italic> species, as well as species of <italic>Saccharomyces</italic> and <italic>Zygosaccharomyces</italic> has increased incidence on the damaged grapes (<xref ref-type="bibr" rid="b10">Fleet, 2003</xref>).</p>
            <p>In our samples, different bacterial, yeasts and fungal species were found (Table <xref ref-type="table" rid="T2">2</xref>). The most abundant microscopic filemanous fungi were: <italic>Alternaria</italic> sp., <italic>Aspergillus niger</italic>, <italic>Botrytis cnerea</italic>, <italic>Cladosporium</italic> sp. and <italic>Penicillium expansum</italic>. <italic>Alternaria</italic> sp. was found in 8 (66.7%) wine grape berries samples. Altogether nine yeast species were isolated: <italic>Candida magnoliae</italic>, <italic>Hanseniospora uvarum</italic>, <italic>Ignatzschineria indica</italic>, <italic>Issatchenkia orientalis</italic>, <italic>Kazachstania exigua</italic>, <italic>Kluyveromyces marxianus</italic>, <italic>Metschnikowia pulcherrima</italic>, <italic>Rhodotorula glutinis</italic> and <italic>Yarrowia lipolityca</italic>. <italic>Issatchenkia orientalis</italic> was the most abundant yeast, which was found in 10 grapes varieties (83.33%). In total, 14 bacterial species were isolated: <italic>Arthrobacter koreeniss</italic>, <italic>Bacillus endophyticus</italic>, <italic>B. cereus</italic>, <italic>B. licheniformis</italic>, <italic>Escherichia coli</italic>, <italic>Enterobacter cloacae</italic>, <italic>Lactobacillus acidophilus</italic>, <italic>L. paracasei</italic>, <italic>L. feremntum</italic>, <italic>Leuconostoc mesenteroides</italic> subs. <italic>mesenteroides</italic>, <italic>Micrococcus luteus</italic>, <italic>Pantotea agglomerans</italic>, <italic>Staphylococcus epidermidis</italic> and <italic>Stenotrophomonas maltophilia</italic>. The most distributed bacterial species was <italic>Leuconostoc mesenteroides</italic> subs. <italic>mesenteroides</italic>, which was isolated from 10 grape berry varieties (83.33%). Figure <xref ref-type="fig" rid="F4">4</xref></p>
            <fig id="F4" position="float">
                <label>Figure 4</label>
                <caption>
                    <p>Vrbov&#xE9;, Slovakia – location.</p>
                </caption>
                <graphic xlink:href="PSJFS-13-1-174_F4.jpg"/>
            </fig>
            <table-wrap id="T2" position="float">
                <label>Table 2</label>
                <caption>
                    <p>Microorganisms isolated from different wine grape berries varieties</p>
                </caption>
                <table frame="hsides" rules="rows" width="100%">
                    <thead>
                        <tr>
                            <th>Grape variety</th>
                            <th>Isolated microorganisms</th>
                        </tr>
                    </thead>
                    <tbody>
                        <tr align="center">
                            <td>Blue Frankish</td>
                            <td align="left"><italic>Alternaria </italic>sp., <italic>Arthrobacter koreensis, Bacillus cereus, Candida magnoliae, Escherichia coli, Hanseniaspora uvarum, Issatchenkia orientalis, Kazachstania exigua, Kluyveromyces marxianus, Lactobacillus acidophilus, Lactobacillus paracasei, Leuconostoc mesenteroides </italic>susp. <italic>mesenteroides,</italic><italic> Pantoea agglomerans, Rhodotorula glutinis, Staphylococcus epidermidis, Stenotrophomonas maltophilia, Yarrowia lipolytica</italic></td>
                        </tr>
                        <tr align="center">
                            <td>Cabernet Savignon</td>
                            <td align="left"><italic>Alternaria </italic>sp., <italic>Arthrobacter koreensis, Bacillus cereus, Botrytis cinerea</italic>, <italic>Cladosporium</italic> sp., <italic>Enterobacter cloacae, Hanseniaspora uvarum, Ignatzschineria indica, Issatchenkia orientalis, Kazachstania exigua, Lactobacillus acidophilus,Leuconostoc mesenteroides </italic>subsp. <italic>mesenteroides, </italic><italic>Metschnikowia pulcherrima, Micrococcus luteus,Staphylococcus epidermidis, Stenotrophomonas maltophilia, Yarrowia lipolytica</italic></td>
                        </tr>
                        <tr align="center">
                            <td>Chardonnay</td>
                            <td align="left"><italic>Alternaria </italic>sp., <italic>Bacillus endophyticus, Escherichia coli, Hanseniaspora uvarum, Issatchenkia orientalis, Kazachstania exigua, Lactobacillus fermentum,Leuconostoc mesenteroides </italic>subsp. <italic>mesenteroides, </italic><italic>Metschnikowia pulcherrima, Pantoea agglomerans, Stenotrophomonas maltophilia, Yarrowia lipolytica</italic></td>
                        </tr>
                        <tr align="center">
                            <td>Dornfelder</td>
                            <td align="left"><italic>Alternaria </italic>sp., <italic>Arthrobacter koreensis,Bacillus cereus, Hanseniaspora uvarum, Ignatzschineria indica, Issatchenkia orientalis, Lactobacillus fermentum, Lactobacillus paracasei, Leuconostoc mesenteroides </italic>susp. <italic>mesenteroides, </italic><italic>Pantoea agglomerans, Rhodotorula glutinis, Yarrowia lipolytica</italic></td>
                        </tr>
                        <tr align="center">
                            <td>Feteasca regala</td>
                            <td align="left"><italic>Bacillus endophyticus, Candida magnoliae, Escherichia coli, Hanseniaspora uvarum, Kazachstania exigua, Lactobacillus fermentum, Lactobacillus paracasei, Leuconostoc mesenteroides </italic>subsp. <italic>mesenteroides, Micrococcus luteus, </italic>
<italic>Penicillium expansum, Staphylococcus epidermidis</italic></td>
                        </tr>
                        <tr align="center">
                            <td>Green Veltliner</td>
                            <td align="left"><italic>Alternaria </italic>sp.<italic>, Bacillus cereus, Hanseniaspora uvarum, Issatchenkia orientalis, Lactobacillus fermentum,Lactobacillus paracasei,Leuconostoc mesenteroides </italic>subsp. <italic>mesenteroides, </italic>
<italic>Metschnikowia pulcherrima, Pantoea agglomerans, Stenotrophomonas maltophilia, Yarrowia lipolytica</italic></td>
                        </tr>
                        <tr align="center">
                            <td>Irsai Oliver</td>
                            <td align="left"><italic>Bacillus endophyticus, Cladosporium </italic>sp., <italic>Hanseniaspora uvarum, Issatchenkia orientalis, Kazachstania exigua, Kluyveromyces marxianus, </italic>
<italic>Lactobacillus fermentum,Lactobacillus paracasei,Leuconostoc mesenteroides </italic>subsp. <italic>mesenteroides, </italic>
<italic>Metschnikowia pulcherrima, Penicillium expansum, Rhodotorula glutinis, Staphylococcus epidermidis</italic></td>
                        </tr>
                        <tr align="center">
                            <td>M&#x16B;ller Thurgau</td>
                            <td align="left"><italic>Bacillus cereus, Cladosporium </italic>sp., <italic>Hanseniaspora uvarum, </italic>
<italic>Ignatzschineria indica, Issatchenkia orientalis, Kazachstania exigua, Kluyveromyces marxianus, Lactobacillus paracasei,Leuconostoc mesenteroides </italic>subsp. <italic>mesenteroides, </italic>
<italic>Metschnikowia pulcherrima, Micrococcus luteus, Penicillium expansum, Stenotrophomonas maltophilia</italic></td>
                        </tr>
                        <tr align="center">
                            <td>P&#xE1;lava</td>
                            <td align="left"><italic>Aeromonas hydrophila, Alternaria </italic>sp., <italic>Aspergillus niger, Cladosporium </italic>sp., <italic>Hanseniaspora uvarum, Issatchenkia orientalis, </italic>
<italic>Lactobacillus fermentum,Lactobacillus paracasei, Metschnikowia pulcherrima, Pantoea agglomerans,Staphylococcus epidermidis, Stenotrophomonas maltophilia, Yarrowia lipolytica, </italic></td>
                        </tr>
                        <tr align="center">
                            <td>Pinot Blanc</td>
                            <td align="left"><italic>Bacillus endophyticus, Botrytis cinerea, Cladosporium </italic>sp., <italic>Hanseniaspora uvarum, </italic>
<italic>Ignatzschineria indica, Kazachstania exigua, Kluyveromyces marxianus, Lactobacillus paracasei,Leuconostoc mesenteroides </italic>susp. <italic>mesenteroides, </italic>
<italic>Metschnikowia pulcherrima, Penicillium expansum, Stenotrophomonas maltophilia</italic></td>
                        </tr>
                        <tr align="center">
                            <td>Rhinriesling</td>
                            <td align="left"><italic>Alternaria </italic>sp., <italic>Bacillus endophyticus, Hanseniaspora uvarum, Issatchenkia orientalis, Lactobacillus fermentum,Lactobacillus paracasei, Metschnikowia pulcherrima, Pantoea agglomerans, Penicillium expansum, Rhodotorula glutinis, Staphylococcus epidermidis, Stenotrophomonas maltophilia</italic></td>
                        </tr>
                        <tr align="center">
                            <td>Welschriesling</td>
                            <td align="left"><italic>Alternaria </italic>sp., <italic>Bacillus licheniformis, Candida magnoliae, Hanseniaspora uvarum, Issatchenkia orientalis, Kazachstania exigua, Lactobacillus fermentum,Lactobacillus paracasei,Leuconostoc mesenteroides </italic>susp. <italic>mesenteroides, </italic>
<italic>Metschnikowia pulcherrima, Staphylococcus epidermidis, Stenotrophomonas maltophilia</italic></td>
                        </tr>
                    </tbody>
                </table>
            </table-wrap>
            <p>The microorganisms can contaminate from different environmental sources. The origin of microorganisms could be the vineyard, can be residents of the winery flora, or can be transmitted with insects such as fruit flies and, bees (<xref ref-type="bibr" rid="b11">Fleet et al., 2002</xref>). Over twenty yeast species have been identified in wines (<xref ref-type="bibr" rid="b23">Renouf et al., 2007</xref>). <italic>Hanseniaspora uvarum</italic> (anamorph: <italic>Kloeckera apiculata</italic>), <italic>Metschnikowia pulcherrima</italic> (anamorph: <italic>Candida pulcherrima</italic>), and <italic>Candida stellata</italic> are thought to be the principal yeasts of grapes. In some studies, <italic>Hanseniaspora</italic> was reported to be the dominant species (<xref ref-type="bibr" rid="b2">Beltran et al., 2002</xref>; <xref ref-type="bibr" rid="b6">Combina et al., 2005</xref>; <xref ref-type="bibr" rid="b13">Hierro et al., 2006</xref>), while <italic>Candida</italic> assumed to be widespread as well (<xref ref-type="bibr" rid="b5">Clemente-Jimenez et al., 2004</xref>). Majority of <italic>Candida stellata</italic> isolates from wine are actually <italic>Candida</italic> zemplinina (<xref ref-type="bibr" rid="b7">Csoma and Sipiczki, 2008</xref>).</p>
            <p>
                <xref ref-type="bibr" rid="b15">Ka&#x10D;&#xE1;niov&#xE1; et al. (2018)</xref>
                 isolated from the surface of grape berries different species of microorganisms. The most abundant G<sup>-</sup> bacteria were <italic>Stenotrophomonas maltophilia</italic> and <italic>Ignatzschineria indica</italic>. Same results were found in the present study with wine grape berries. Within 22 different species of G<sup>+</sup> bacteria, <italic>Bacillus endophyticus</italic>, <italic>Paenibacillus glucanolyticus</italic>, <italic>Paenibacillus lautus</italic> and <italic>Staphylococcus succinus</italic> were the most isolated among bacteria <italic>Rhodotorula mucilaginosa</italic> was the most abundant among yeasts.</p>
            <p>
                <xref ref-type="bibr" rid="b20">Kunov&#xE1; et al. (2018)</xref>
                 found fungal counts ranged from 2.85 log cfu.g<sup>-1</sup> in Cabernet Sauvignon to 4.83 log cfu.g<sup>-1</sup> in Feteasca regala. After identification of 627 isolates of microscopic fungi, moulds belonged to genera <italic>Alternaria</italic> and <italic>Penicillium</italic> were the most widespread and were isolated from 100% of samples. <italic>Alternaria</italic> sp. was the most abundant fungal species in our study also. The high prevalence of <italic>Aspergillus</italic> (76.92%) and <italic>Cladosporium</italic> (76.92%) was found (Table <xref ref-type="table" rid="T2">2</xref>).</p>
            <p>
                <italic>Alternaria</italic>, <italic>Cladosporium</italic> and <italic>Penicillium</italic> were the most abundant moulds after identification of 1377 cultures of microscopic fungi isolates <xref ref-type="bibr" rid="b8">Fels&#xF6;ciov&#xE1; et al. (2017)</xref>. The identified prevalence found was similar to our results (100%). The higher prevalence was detected for <italic>Fusarium</italic> (100%), <italic>Epicoccum</italic>, <italic>Rhizopus</italic> (87.5%), <italic>Botrytis</italic>, <italic>Aspergillus</italic> (75%) and <italic>Mucor</italic> (62.5%). Different fungal genera with higher prevalence in comparison with our study were identified. <xref ref-type="bibr" rid="b18">K&#xE1;ntor et al. (2017)</xref> found 11 genera of G<sup>-</sup> (11%), 11 of G<sup>+</sup> (27%) bacteria and nine genera of yeasts (62%) among 200 isolates of 19 Slovak grape samples. The most frequently isolated G<sup>-</sup> bacteria were <italic>Acinetobacter</italic> (22%), <italic>Pseudomonas</italic> (22%) and <italic>Sphingomonas</italic> (13%). The most common genera of G<sup>+</sup> bacteria were <italic>Bacillus</italic> (20%), <italic>Lactobacillus</italic> (19%), <italic>Leuconostoc</italic> and <italic>Staphylococcus</italic> (11%). The most common yeasts genera were <italic>Hanseniaspora</italic> (37%), <italic>Metschnikowia</italic> (31%), and <italic>Rhodotorula</italic> (10%). Our results on diversity of microbial species in grape samples corresponded to <xref ref-type="bibr" rid="b18">K&#xE1;ntor et al. (2017)</xref> results.</p>
            <p>Similar results were described in <xref ref-type="bibr" rid="b16">K&#xE1;ntor et al. (2016)</xref> study, who studied similar grape wine varieties as sampled in our study. The most dominant species was <italic>Saccharomyces cerevisiae</italic> isolated from all 15 new wine samples, that was a very good wine quality indicator. Altogether, seven different <italic>S. cerevisiae</italic> strains were identified with mass spectrometry, the second most common species was <italic>Kloeckera apiculata</italic> (<italic>Hanseniaspora uvarum</italic>) found in seven new wine samples. Also, other non – <italic>Saccharomyces</italic> yeasts such as <italic>Metschnikowia pulcherrima</italic>, <italic>Pichia occidentalis</italic> and <italic>Pichia kluyveri</italic> were identified.</p>
        </sec>
        <sec sec-type="conclusion">
            <title>CONCLUSION</title>
            <p>Natural microflora of grape berries is very diverse. In our study, the bacteria were the most distributed in comparison with other groups of microorganisms. The highest bacterial counts were found in Palava grape variety, followed by Welschriesling. In our study, 5 different yeast, 9 moulds and 14 bacteria species on grape berries were identified.</p>
        </sec>
    </body>
    <back>
        <ack>
            <title>Acknowledgments:</title>
            <p>This work has been supported by the grant of the European Union project no. 26220220180: Building Research Centre “AgroBioTech” and the grant of Slovak Research and Development Agency No. VEGA 1/0411/17.</p>
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</article>